RESEARCH Themes
The Northern Gulf Institute (NGI) has four scientific research themes:
This research theme focuses on the effects of climate change and climate variability on marine ecosystems, adjacent watersheds, and the socioeconomic well-being of the region. It also addresses how the ecosystem affects climate processes.
This research theme encompasses the physical and biological systems as well as the biological and socio-economic dimensions associated with coastal hazards, such as population increases, that are of concern to agencies responsible for the public good of coastal regions and for a sustainable Gulf of Mexico.
This research theme promotes sustainable coastal development, facilitating community resiliency, and enabling an ecosystem-based approach to management, including fisheries management. Enhanced scientific understanding of the interconnections between the marine ecosystem and the adjacent watershed including their resource stewardship implications drive the focus of these efforts.
This research theme investigates, develops, and tests innovative data stewardship solutions. The research addresses gaps in data management capacity resulting from the development of new environmental data sensors and platforms, larger data volumes, and increased public demand for information. These efforts enhance NOAA’s data management, visualization, and dissemination capabilities.
Research Projects
Active Research Projects
This page contains summaries of active projects organized by funding source. The first few words of each summary are bolded so readers can see the topic that a project addresses or a key component (e.g., technology or method) that it employs.For more information, go to Projects & Publications Search (under the Research Tab).
PIs/Co-PIs: If your project summary needs correction, please send an email to maggied@ngi.msstate.edu.
Funding Sources:
- Oceanic and Atmospheric Research (26 projects)
- National Ocean Service (5 projects)
- National Environmental Satellite, Data, and Information Service (4 projects)
- National Marine Fisheries Service (3 projects)
- National Weather Service (2 projects)
- Other-Funded (0 projects)
Oceanic and Atmospheric Research (OAR)
1.Wind speed at the ocean’s surface influences hurricane forecasts by the National Hurricane Center (NHC). Researchers are improving estimates of surface wind speed by evaluating the Stepped-Frequency Microwave Radiometer (SFMR) flown on hurricane hunter aircraft that is used in gathering data that factors into wind speed calculations. The need for improvement was realized after they found greater variability between the SFMR estimates and those from other sources, such as dropsonde data and adjusted flight-level winds. The researchers are improving the detection of radio frequency interference (RFI) that the SFMR uses to estimate surface wind speed by updating it with a more robust technique using reflectivity data from the tail-Doppler radars (TDR) on hurricane hunter aircraft to correct for rain impacts. Data collected during the 2021 and beginning of the 2022 hurricane seasons will serve as an independent dataset to test the updated SFMR algorithm, which will be provided to NOAA and Air Force hurricane hunters for consideration to implement operationally.
Title, NGI Number: Improvements to Surface Wind Speed Estimates in Tropical
Cyclones, 21-NGI4-03 and 20-NGI3-113
Performance Period:
09/01/2020 to 09/30/2022
Funding Source: NOAA
Oceanic and Atmospheric Research (OAR) Atlantic
Oceanographic and Meteorological Laboratory (AOML)
PI/Co-PI: Heather
Holbach, Florida State University
NGI Theme(s): Coastal
Hazards
Collaborators/Partners: NOAA
National Weather Service (NWS), National Centers for Environmental Prediction
(NCEP) National Hurricane Center (NHC), Office of Marine and Aviation
Operations (OMAO) Aircraft Operations Center (AOC), and AOML/Hurricane Research
Division (HRD); University of Miami/Cooperative Institute for Marine and
Atmospheric Studies (CIMAS); the National Center for Atmospheric Research
(NCAR); and ProSensing Inc.
2.The tail-Doppler radars (TDR) on NOAA hurricane hunter aircraft collect data, specifically spatial coverage of the surface wind field, that has the potential to improve forecasts by the National Hurricane Center (NHC). Forecasters rely on data provided by satellites and hurricane hunter aircraft; however, the spatial coverage of the aircraft-based surface wind speed estimates are limited to being along the flight track or point measurements, leading to an under-sampling problem in which the peak intensity and desired wind radii are unlikely to be observed on any given flight. Collaborating with TDR experts at the NOAA Hurricane Research Division researchers are developing a method to reduce the lower-level TDR winds to the surface which would provide swaths of data as opposed to a track or single point of data. To do so, they are comparing the TDR wind field from the swath analysis at 1 km altitude (and adjacent levels) to wind surface speeds from dropsonde and Stepped-Frequency Microwave Radiometer (SFMR). This analysis will be performed using data collected since the late 1990s when the TDR fore-aft scanning technique was first employed.
Title, NGI Number: TDR Surface Wind Reduction, 21-NGI3-127
Performance Period:
06/01/2021 to 07/31/2022
Funding Source: NOAA
Oceanic and Atmospheric Research (OAR) Atlantic Oceanographic and Meteorological
Laboratory (AOML)
PI/Co-PI: Heather
Holbach, Florida State University
NGI Theme(s): Coastal
Hazards
Collaborators/Partners:
NOAA/AOML Hurricane Research Division (HRD)
3.Hurricane predictions typically utilize statistical methods, but researchers are investigating the use of physical mechanismsin prediction models. Specifically, they are looking at mechanisms that control the influence of the Atlantic Warm Pool (AWP) on tropical cyclone steering flow that drives landfall. To do so, they are using retrospective forecast data from the National Multi-Model Ensemble Phase-2 to quantify the seasonal predictability of the AWP and its modulation on the steering flow as well as associated atmospheric states conducive to tropical cyclone landfall. This involves analysis of climate model simulations (using the Community Earth System Model) for the AWP modulation up to 6 months before the beginning of the Atlantic hurricane season.They will also development a beta advection model to quantify the propagation associated with the AWP modulations. A seasonal outlook for landfalling Atlantic hurricanes will be developed based on these modeled frameworks. This method could also influence the predictability of other seasonal phenomena besides tropical cyclones.
Title, NGI Number: Enhanced
Seasonal Landfalling Hurricane Outlook, 19-NGI3-77
Performance Period:
10/01/2019 to 09/30/2022
Funding Source: NOAA
Oceanic and Atmospheric Research (OAR) Atlantic Oceanographic and
Meteorological Laboratory (AOML)
PI/Co-PI: Andrew
Mercer, Mississippi State University
NGI Theme(s): Coastal
Hazards
Collaborators/Partners: National
Center for Atmospheric Research
4.Air-sea interactions with fluxes of heat, moisture, and momentum serve as indicators of change in regional climate and weather patterns and, at smaller scales, may be linked to drought, floods, and storm intensity and track. Flux-related variables are used in forcing ocean models and testing coupled ocean/atmospheric models. To improve the quality of wind and flux products, researchers are developing a global (over water) multi-satellite wind product and a satellite-based flux product that assimilates satellite and in situ data. The new gridding technique combines the strengths of satellite observations and numerical weather prediction analyses through a planetary boundary-layer model to produce a higher resolution surface vector wind data set. Earlier efforts resulted in the delayed-mode objective 1˚ FSU3 wind and flux product, monthly wind products, the quick-look 1˚ Legler Indian Ocean (currently not being produced) and the 2˚ Tropical Pacific pseudo-wind stress, which contributes to the NOAA Climate Diagnostics Bulletin. The wind products are available at https://mdc.coaps.fsu.edu/data, which is accessed by ~170 registered users representing academic institutions, governmental agencies, and public/non-profit entities from 16 countries.
Title, NGI
Number: Climate Variability in Ocean Surface Turbulent Fluxes, 21-NGI4-04
Performance Period:
10/01/2016 to 09/30/2022
Funding Source: NOAA
Oceanic and Atmospheric Research (OAR) Climate Program Office (CPO)
PI/Co-PI: Mark
Bourassa/Shawn Smith, Florida State University
NGI Themes: Climate
Change and Climate Variability Effects on Regional Ecosystems, Coastal Hazards
Collaborators/Partners: NOAA
National Centers for Environmental Information (NCEI), National Centers for
Environmental Prediction (NCEP), Observing System Monitoring Center (OSMC),
Climate Prediction Center (CPC), and Atlantic Oceanographic and Meteorological
Laboratory (AOML) Hurricane Research Division (HRD) and Physical Oceanography
Division (PHOD); SeaFlux Project, NASA NEWS, Ocean
Heat Flux Project, Southern Ocean Observing System (SOOS), NASA Ocean Vector
Winds Science Team, International Ocean Vector Winds Science Team, and
satellite science community
5.Accurately predicting tropical cyclone (TC) intensity is challenging, and a contributing factor is the poor understanding and modeling of boundary layer turbulent processes in high-wind conditions.These processes have scarce observations, and existing planetary boundary layer (PBL) parameterizations in models are generally designed for low-wind conditions, pointing to the need for continuous development of PBL parameterizations for hurricane forecast models. Researchers are building up their recent development of a modeling framework that combines a small-domain large eddy simulation (LES) and dropsonde thermodynamic data (collected in mature hurricanes by NOAA aircraft) to study the turbulence characteristics in the TC boundary layer. This framework pioneers the way to evaluate and improve the PBL schemes in hurricane conditions, and it was used to evaluate and improve the PBL scheme from NOAA’s Global Forecast System (GFS) and Hurricane Analysis and Forecast System (HAFS) models. Hindcasts of the 2021 hurricane season demonstrated that the improved PBL schemes improves both intensity and structure forecasts. To transition their research to operations (R2O), they are incorporating the improved PBL scheme into the new version of HAFS, and the 2022 real-time HAFS forecasts will be available at https://storm.aoml.noaa.gov/viewer/. They will also use the improved PBL scheme to assess the role of PBL parameterizations for Hurricane Michael (2018), which was stronger than projected. As their recent findings highlight the role of turbulence-kinetic-energy (TKE) in TC intensity and structure, they recommend TKE-based PBL schemes for TC simulations.
Title, NGI Number: Toward
Improved Understanding and Modeling of Boundary Layer Processes in Tropical
Cyclones Using Large-Eddy Simulation, 21-NGI4-01
Performance Period: 10/01/2021
to 09/30/2023
Funding Source: NOAA
Oceanic and Atmospheric Research (OAR) Atlantic Oceanographic and
Meteorological Laboratory (AOML)
PI/Co-PI: Xiaomin Chen/Robert Moorhead, Mississippi State University
NGI Theme(s): Coastal
Hazards
Collaborators/Partners: Texas A&M University, National Center for Atmospheric Research (NCAR), University of Miami/Cooperative Institute for Marine and Atmospheric Studies (CIMAS), NOAA AOML/Hurricane Research Division (HRD)
6.The investigation of tornado formation includes analysis of storms that spawn unusual or unexpected tornados. From January to April 2021, researchers deployed mobile facilities to collect data on atmospheric boundary layer evolution and cloud characteristics that preceded thunderstorms that formed along or ahead of cold fronts (known as Quasi-Linear Convective Systems, QLCS). They are conducting quality control of and analyzing the data acquired and will also analyze pre-storm conditions for 40 cold season events from 2005 to 2021. Case studies will be used to examine the internal structure of two severe QLCSs (11/18/2017 and 02/12/2020), including the 03/03/2020 tornadic storm that devastated central Tennessee. Additionally, they are conducting inter-comparisons of wind profiles derived from various systems (radar wind profilers, Doppler lidar, Doppler sodar, and scanning Doppler radars). Each case will include analyses of dual Doppler radar data, environmental data from profiling systems and balloon soundings, and the kinematics of QLCS updrafts and downdrafts using vertically pointing Doppler radar data.
Title, NGI Number: Improved
Understanding of the Kinematic and Thermodynamic Characteristics of Cold
Season, Non-Classical Tornadic Storms, 20-NGI3-109
Performance Period:
08/01/2020 to 05/31/2022
Funding
Source: NOAA
Oceanic and Atmospheric Research (OAR)
PI/Co-PI: Kevin Knupp,
University of Alabama at Huntsville
NGI Theme(s): Coastal Hazards
Collaborators/Partners: NOAA Earth System Research Laboratory (ESRL)
7.Meteorological data from U.S. research vessels are being collected and monitored for quality control and disseminated through the Shipboard Automated Meteorological and Oceanographic System Data Assembly Center (SAMOS DAC) https://samos.coaps.fsu.edu/html/, which supports the NOAA Global Ocean Monitoring and Observing mission. Recent efforts have included a review and update of components of the data processing systems and a development of procedures for the automated intake of instrument metadata. To date, observation data has been archived for 1,329 ship days from 16 NOAA and four other research vessels. These observations contribute to several marine products, including the International Comprehensive Ocean-Atmosphere Data Set and the Surface Underway Marine Database Portal.
Title, NGI Number: U.S.
Research Vessel Surface Meteorology Data Assembly Center, 21-NGI4-07
Performance Period:
10/01/2016 to 09/30/2022
Funding Source: NOAA
Oceanic and Atmospheric Research (OAR)
PI/Co-PI: Shawn
Smith/Mark Bourassa, Florida State University
NGI Theme(s): Data
Management
Collaborators/Partners: NOAA
National Centers for Environmental Information (NCEI), NOAA Office of Marine
and Aviation Operations (OMAO), NOAA Earth Systems Research Laboratory Physical
Science Division (ESRL/PSD), and the NSF Rolling Deck to Repository Project
(R2R).
8.Drought conditions and their frequency in the southeast U.S. are modulated by complex interactions of large-scale climate variations. To better understand the underlying mechanisms behind this relationship, researchers are employing reanalysis products to study drought conditions stemming from weather and climate variations over the past 50-100 years and performing fully coupled global simulations using the Community Earth System Model (CESM). Specifically, they are exploring the impacts of interdecadal Pacific oscillation and Atlantic multidecadal oscillation and the associated activity of El Niño–Southern Oscillation (ENSO) on drought. They will also consider how future changes in the state of the Pacific and Atlantic oceans might impact drought conditions and incorporate machine learning techniques to validate and test for projections of drought conditions. This model is a first attempt at predicting southeast U.S. drought exclusively through utilizing multidecadal teleconnection patterns with ENSO phase.
Title, NGI Number:
Asymmetric Influences of the Pacific and Atlantic Oceans on the Decadal Drought
Frequency in the Southern U.S., 21-NGI4-15
Performance Period:
10/01/2021 to 09/30/2023
Funding Source: NOAA
Oceanic and Atmospheric Research (OAR) Atlantic Oceanographic and Meteorological Laboratory (AOML)
PI/Co-PI: Andrew
Mercer, Mississippi State University
NGI Theme(s): Climate
Change and Climate Variability Effects on Regional Ecosystems; Coastal Hazards
Collaborators: NOAA
AOML Physical Oceanography Division
9.Uncrewed Aircraft Systems (UAS) are helping provide rapid response during and after flooding events with near real-time imagery of flooded areas, enabling the production of inundation maps and more accurate forecasts and warnings. Researchers have executed multiple missions with UAS. The mission around Greenwood, MS documented one of the highest floods ever recorded in the area and provided forecast imagery, as opposed to just written descriptions, that showed the impact of future floods. The mission in late 2020 flew a 500# UAS in the aftermath of Hurricane Delta and collected data along the main stem of the Mississippi River south of Greenville, MS. Collaboration between UAS operators and users of UAS data has helped each to understand the other’s needs and identifed ways to improve the capture, transmission, and display of real-time imagery. This work has helped advance proof that the UAS can operate safely beyond a visible line of sight with a human on the aircraft and can quickly document and track changes in river channels (such as structure, morphology, and presence of debris) and provide details on levee breaches and inundation (location, width, depth).
Title, NGI Number:
SHOUT4Rivers, 19-NGI3-84
Performance Period:
10/01/2017 to 09/30/2022
Funding Source: NOAA
Oceanic and Atmospheric Research (OAR) Uncrewed Systems Research Transition
Office (UxSRTO)
PI/Co-PI: Robert
Moorhead/Jamie Dyer, Mississippi State University
NGI Theme(s): Coastal
Hazards
Collaborators/Partners: NOAA
Office of Water Prediction (OWP); and NOAA NWS Southern Region, Lower
Mississippi River Forecast Center (LMRFC), West Gulf River Forecast Center
(WGRFC), and Southeast River Forecast Center (SERFC)
10.The ocean’s biological carbon pump (BCP) helps modulate the Earth’s climate. To understand the biodiversity and variability of the BCP and its relation to carbon cycling, experts in ‘omics, biogeochemistry, and paleoceanography are combining eDNA with emergent observing technologies (such as BGC-Argo) and paleoclimate archives. Leveraging NOAA and UNOLS cruises, they will deploy moored sediment traps at the base of the euphotic zone in the northern Gulf of Mexico to collect particulate fluxes and analyze for biodiversity and contributions to the BCP. They will perform amplicon metabarcoding of specific gene regions for a range of organisms (e.g., 18S rRNA for plankton and 16S rRna for bacteria) to link carbon export processes with taxonomic groups across multiple trophic levels. Additionally, they will compare the results of a traditional analysis of foraminifera with a targeted eDNA study of foraminiferal biodiversity. This effort will establish and facilitate future best practices for eDNA sampling and may contribute to modeling carbon and nutrient export and cycling as well as developing biological proxies to characterize the strength and efficiency of the BCP.
Title, NGI Number: Characterizing the Biodiversity and Variability of the Biological Carbon Pump
in the Northern Gulf of Mexico, 21-NGI4-06
Performance Period:
10/01/2021 to 09/30/2026
Funding Source: NOAA
Oceanic and Atmospheric Research (OAR) Atlantic Oceanographic and
Meteorological Laboratory (AOML)
PI/Co-PI: Luke
Thompson, Mississippi State University
NGI Theme(s): Climate Change and Climate Variability Effects on Regional
Ecosystems, Ecosystem Management, Data Management
Collaborators:
University of South Carolina, US Geological Survey
11.Biogeochemical fluxes in the ocean are linked to microbial diversity, and researchers are seeking to better understand that relationship by collaborating with the Global Ocean Ship-based Hydrographic Investigations Program (GO-SHIP). GO-SHIP is an ocean and climate observing system aimed at producing a high-resolution picture of ocean conditions and quantifying ocean and climate dynamics. They will provide support for the 2022 GO-SHIP cruise P02; following the cruise, they will perform analyses on the collected DNA (from plankton, microorganisms, metazoans, and fish), including DNA metabarcoding to sequence bacteria and protists (16S and18S rRNA genes) and fish environmental DNA (mitochondrial 12S rRNA gene). After metabarcoding and sequencing are completed, they will analyze sequence data in combination with the metagenomic, physical, and chemical data from the GO-SHIP collaborators.
Title, NGI Number: Bringing
Environmental Monitoring to the Global Ocean Ship-Based Hydrographic
Investigations Program (GO-SHIP), 21-NGI4-02
Performance Period:
10/01/2021 to 09/30/2022
Funding Source: NOAA
Oceanic and Atmospheric Research (OAR)/Global Ocean Monitoring and Observing
(GOMO)
PI/Co-PI: Luck
Thompson, Mississippi State University
NGI Themes: Climate
Change and Climate Variability Effects on Regional Ecosystems
Collaborators/Partners: Michigan
State University Research Technology Support Facility
12.The biological effects of ocean acidification (OA) remain unclear; however, recent efforts to monitor OA via the Gulf of Mexico Ecosystems and Carbon Cycle (GOMECC) cruises have revealed spatial differences in OA parameters (e.g., pH and CO2). To better understand the biological response to OA, researchers will collect water samples from CTD casts and surface waters during the GOMECC-4 cruise and sequence and analyze environmental DNA or eDNA for the presence of species in coastal and open-ocean sites. The eDNA sampling will be coordinated with biological measurements (plankton counts, grazing, calcification), OA parameters (total alkalinity, pH, carbonate, dissolved inorganic carbon), and other physicochemical parameters (oxygen, salinity, temperature). The sequence data will be analyzed bioinformatically to reveal patterns in biodiversity and composition among populations of bacteria, plankton, and fish. These data, combined with physical and chemical parameters, will help develop models of ecosystem biodiversity (a multi-trophic level model of biodiversity and a predictive model of harmful algal bloom responses to environmental conditions) and identify potential indicator species of OA. Information gained will advance eDNA metabarcoding as a standard tool for biological ocean research, biodiversity assessments, and ecosystem management.
Title, NGI Number:
Assessing Ecosystem Responses of Gulf of Mexico Communities to OA using
Environmental DNA , 21-NGI3-132
Performance Period:
07/01/2021 to 09/30/2022
Funding Source: NOAA
Oceanic and Atmospheric Research (OAR) Atlantic Oceanographic and
Meteorological Laboratory (AOML)
PI/Co-PI: Luke
Thompson, Mississippi State University
NGI Theme(s): Climate
Change and Climate Variability Effects on Regional Ecosystems
Collaborators/Partners:
Cooperative Institute for Marine and Atmospheric Studies (CIMAS)
13.Increases in ocean acidification (OA) contribute to changing physicochemical conditions, which can affect processes that drive productivity, biodiversity, and food web dynamics. During the NOAA Gulf of Mexico Ecosystems and Carbon Cycle 3 (GOMECC-3) cruise, the first biologically relevant sampling and rate measurements with relationship to OA were conducted, with initial data suggesting a strong link between OA, hypoxia, and eutrophication. To provide an integrated view of these conditions and their ecosystem impacts, researchers are analyzing datasets collected during GOMECC-3 and will collect and analyze marine samples on the GOMECC-4 cruise. They will characterize plankton communities and quantify changes in carbon flow to higher trophic levels by conducting onboard microzooplankton and copepod grazing experiments using traditional and ‘omics approaches. They will also identify indicator species/assemblages that are most impacted by environmental stressors for continued tracking and collect larval fish and analyze their distribution, abundance, diet, growth, condition, and evidence of microplastic ingestion for tracking OA impacts on food web dynamics. This project includes hosting/mentoring a Research Experience for Undergraduate (REU) intern.
Title, NGI
Number: USM REU:
Evaluation of OA Impacts to Plankton and Fish Distributions in the Gulf of
Mexico during GOMECC-4 with a focus on HAP-Interactions (BIO-GOMECC-4) Years 2
& 3, 21-NGI4-05
Performance
Period:
10/01/2021 to 09/30/2023
Funding
Source: NOAA Oceanic
and Atmospheric Research (OAR) Atlantic Oceanographic and Meteorological
Laboratory (AOML)
PI/Co-PI: Frank Hernandez, University of Southern
Mississippi
NGI Theme(s): Ecosystem
Management, Climate Change and Climate Variability Effects on Regional
Ecosystems
Collaborators: NOAA Southeast Fisheries Science Center
(SEFSC) Pascagoula Laboratory, Gulf Coast Research Lab, North Carolina State
University, and University of Louisiana at Lafayette
14.An ocean biogeochemical model is being configured to improve our understanding about potential large-scale climate drivers of shifts in plankton biomass and range for a suite of coastal pelagic species in the Gulf of Mexico and South Atlantic Bight. Researchers have configured a Modular Ocean Model – Tracers Of Phytoplankton with Allometric Zooplankton (MOM5-TOPAZ) model for the north Atlantic for the time period of 1958 to 2019 using a new atmospheric dataset for driving ocean-sea-ice models (JRA55-DO) as surface forcing. This test model has a one-quarter degree resolution, which is a necessary first step before increasing model resolution to 10 km. Model outputs are available in the Network Common Data Form (NetCDF) format on the NOAA OAR/AOML server.
Title, NGI Number: Ocean
Biogeochemical Modeling of the U.S. Gulf and East Coasts, 20-NGI3-118
Performance Period: 10/01/2020 to 09/30/2022
Funding Source: NOAA
Oceanic and Atmospheric Research (OAR) Atlantic Oceanographic and
Meteorological Laboratory (AOML)
PI/Co-PI: Fabian
Gomez, Mississippi State University
NGI Theme(s): Climate
Change and Climate Variability Effects on Regional Ecosystems
Collaborators/Partners: NOAA
AOML Physical Oceanography Division
15.Declines in coastal pelagic species abundance along the U.S. Gulf Coast and South Atlantic Bight prompted researchers to examine changes in the food chain and physical ocean mechanisms that might be driving declines. Using prey field data from the Southeast Area Monitoring and Assessment Program (SEAMAP), they quantified basin-wide productivity for mesozooplankton secondary production estimates from 1993 to 2012 in Gulf of Mexico fishing regions. They analyzed long-term landing and survey data for King Mackerel, Spanish Mackerel, and Cobia. Results showed significant decreases in King Mackerel growth and similar decreases in secondary production. By demonstrating that secondary production has a significant impact on growth rates of King Mackerel, the researchers highlighted the importance of an ecosystem-based management approach. The 20-year secondary production estimates can be used to investigate the link between lower trophic level productivity and the productivity or recruitment of other species.
Title, NGI Number: Recent
Declines in Coastal Pelagic Species along the U.S. Gulf and South Atlantic
Bight and the Potential Impact of Large-Scale Ocean Circulation Changes,
19-NGI3-73
Performance Period: 10/01/2019
to 07/31/2022
Funding Source: NOAA
Oceanic and Atmospheric Research (OAR) Atlantic Oceanographic and
Meteorological Laboratory (AOML)
PI/Co-PI: Frank
Hernandez, University of Southern Mississippi
NGI Theme(s):
Ecosystem Management
Collaborators/Partners: NOAA
AOML Physical Oceanography Division, NOAA Southeast
Fisheries Science Center (SEFSC) Sustainable Fisheries Division in the Gulf
of Mexico Branch, and Cooperative Institute for Marine and Atmospheric Studies
(CIMAS)
16.Cetaceans (whales, dolphins, and porpoises) are targets of conservation efforts. In the Gulf of Mexico, the endangered Bryde’s whale population has approximately 33 individuals and Bottlenose dolphins were affected by the Deepwater Horizon oil spill. Understanding the ecology and feeding behavior of Bryde’s whales and oil spill impacts on dolphins are priorities of NOAA Fisheries. Researchers are applying their expertise in ’omics and using cutting-edge DNA analysis facilities and bioinformatics capacity to support conservation research at the Southeast Fisheries Science Center (SEFSC). Using samples collected by SEFSC scientists of both fish and eDNA from deep waters where Bryde’s whales had just been observed, researchers will identify potential prey species. Using samples collected by SEFSC scientists of skin microbiome from dolphins in Barataria Bay and from those near the spill site before and shortly after the spill as well as several years later, they will identify a baseline skin microbiome and possible effects on it from the oil spill. Researchers will perform DNA metabarcoding analyses and analyze the DNA sequence results to find the taxonomic compositions of the samples.
Title, NGI Number: Applying
Omics Technologies to Support Cetacean Conservation in the Gulf of Mexico,
21-NGI3-131
Performance Period:
07/01/2021 to 09/30/2022
Funding Source: NOAA
Oceanic and Atmospheric Research (OAR) Atlantic Oceanographic and
Meteorological Laboratory (AOML)
PI/Co-PI: Luke
Thompson, Mississippi State University
NGI Theme(s): Climate
Change and Climate Variability Effects on Regional Ecosystems
Collaborators/Partners: NOAA
Southeast Fisheries Science Center (SEFSC)
17.Five turtle species live in the Gulf of Mexico, with one listed as threatened (loggerheads) and four as endangered (leatherback, green, Kemp’s Ridley, and hawksbill). The Gulf of Mexico Sea Turtle Early Restoration Project aims to restore sea turtle populations affected by the Deepwater Horizon oil spill. Researchers with the NOAA and Northern Gulf Institute are collaborating to better understand sea turtle strandings by implementing and testing two analytical and mapping tools. One is the Backcasting Analysis and Mortality Mapping (BAMM) tool that provides a backcast prediction of the origin of strandings; the other is the Beaching Probability Index (Beaching Index) that evaluates the probability and location of strandings. They will also design and implement a web interface to access results from the Beaching Index. Estimates of origin for stranded sea turtles and predictions of the influence of environmental conditions on animal drift and dispersal will provide valuable insight on turtle strandings and mortality for resource managers and facilitate better response and planning for sea turtle stranding emergencies.
Title, NGI
Number: Coastal Science Research, Data Development, and Information
Services (NRDA Turtle Project), NA18OAR4170438
Performance Period: 09/01/2018 to 08/31/2022
Funding Source: Mississippi-Alabama Sea Grant Consortium (MASGC) via NOAA Oceanic and Atmospheric Research (OAR) via National Centers for Environmental Information (NCEI)
PI/Co-PI: Just
Cebrian/Zhankun Wang, Mississippi State University
NGI Theme(s): Ecosystem Management
Collaborators/Partners: NOAA Southeast
Fisheries Science Center (SEFSC) in Mississippi, Office of Protected Resources
(OPR), Restoration Center (RC), and National Centers for Environmental
Information (NCEI)
18.Electronic monitoring (EM) as a sampling technology is being developed to help NOAA fisheries efficiently collect information on fish species, size, and catch events. Researchers are using EM hardware and software to improve the NOAA electronic logbook (eLog). They built several hardware test structures, developed and analyzed subject area specific machine learning algorithms, prototyped EM hardware, and evaluated EM software systems. They supplied information to NOAA NMFS on data requirements for use of the Google Cloud Platform and the NMFS National Image Library Initiative. The prototype hardware (cameras, computers, etc.) will be installed on a NOAA survey vessel, after which data will be collected and annotated. They are also working with Mote Marine Laboratory on a shark species identification pilot project.
Title, NGI Number: Develop
Innovative Sampling Technologies, 21-NGI4-13
Performance Period: 10/01/2020 to 09/30/2022
Funding Source: NOAA Oceanic and Atmospheric Research (OAR) Atlantic
Oceanographic and Meteorological Laboratory (AOML)
PI/Co-PI:John Ball/Robert
Moorhead, Mississippi State University
NGI Theme(s): Data
Management, Ecosystem Management
Collaborators/Partners: NOAA
NMFS SEFSC and Alaska Fisheries Science Center (AFSC), Mote Marine Laboratory, CVisionAI, and Saltwater Inc.
19.Building bioinformatics capacity is critical to address threats on ecosystem services, especially as genome-based techniques (termed ‘omics) are now the gold-standard for biological measurement. However, bioinformatics expertise has not kept pace with the generation of sequence data, creating created a data backlog and hindering the transition of data to actionable information. This project supports on-going efforts to develop 'omics-derived ecosystem indices for incorporation into models and a trained workforce that can use computational tools to analyze genomic databases. This includes analysis of the global Ocean Sampling Day dataset using bioinformatic tools in support of the Earth Microbiome Project, collaboration with international partners for publications, and getting back-logged data into the public domain. Additionally, there is analysis of ocean and animal microbiome (existing DNA sequences from Gulf of Mexico samples) and evaluation of a prototype autonomous underwater vehicle that can collect samples for 'omics analysis. The transfer of bioinformatics knowledge to students and workers is being done through presentations, workshops, and university courses (e.g., Applications of Biotechnology in Marine Biology).
Title, NGI Number: Bioinformatics to Aid Ecosystem Understanding, Research Transition, and Development of a Next-Gen Workforce, 17-NGI3-33
Performance Period: 10/01/2017 to 06/30/2022
Funding Source: NOAA Oceanic and Atmospheric Research (OAR) Atlantic Oceanographic and Meteorological Laboratory (AOML)
PI/Co-PI:Shiao Wang, University of Southern Mississippi
NGI Theme(s): Climate Change and Climate Variability Effects on Regional Ecosystems, Coastal Hazards, Ecosystem Management, Data Management
Collaborators/Partners:
20.Building bioinformatics capacity infrastructure supports 'omics observations and characterizations of sites and microbiomes important to the sustainable use of ocean resources. This includes bioinformatic analysis to characterize microbial communities collected from the Gulf of Mexico, (rich in oil and natural gas) and from the Great Lakes (economic resource and source of drinking water), both of which are threatened by harmful algal blooms. Such characterizations will be integrated into a global database to extend the ability to classify microbial genomes from individual samples, such as microbes associated with energy reserves. Completed were the development and assessment of bioinformatics workflows (Tourmaline, an amplicon sequence processing workflow that uses QIIME 2 and Snakemake https://github.com/NOAA-AOML/tourmaline) and the application of workflows to characterize microbial communities in the Gulf of Mexico, the Red Sea, and the Great Lakes. Also developed were training and resources for bioinformatics expertise (workshops, updated university course Applications of Biotechnology in Marine Biology, and development of course on data science using Python available on GitHub and YouTube). Engagement with academic and governmental groups was done to develop and promote metadata and data standards and the development of a user-friendly visual interface to allow assignment of individual microbial genomes to sample type.
Title, NGI Number: Bioinformatics to Support Ecosystem Fisheries and Blue Economy ‘Omics Applications, 19-NGI3-71
Performance Period: 10/01/2018 to 09/30/2022
Funding
support: NOAA Oceanic and Atmospheric Research (OAR) Atlantic Oceanographic and Meteorological Laboratory (AOML)
PI/Co-PI: Shiao
Wang, University of Southern Mississippi
NGI Theme(s): Climate Change and Climate Variability Effects on Regional Ecosystems, Ecosystem Management, Data Management
Collaborators/Partners:University of California San Diego, Harvard University, Broad Institute of Harvard and MIT, University of Oulu (Finland), University of South Carolina, University of Florida, King Abdullah University of Science and Technology (Saudi Arabia), Bangor University (UK), Northern Arizona University, Leibniz Institute (Germany), New York University Abu Dhabi (UAE)
21.Building ‘omics and bioinformatics capacity for reproducible and efficient analysis of environmental samples requires a data framework with metadata standards and a metadata quality control workflow, a sequence data quality control workflow, expanded amplicon reference sequence databases, and an improved amplicon processing workflow. This project produced a draft OAR 'Omics Data Management Plan to be published as a NOAA Technical Report and produced data and metadata standards (https://microbiomedata.org/) and a Tourmaline amplicon sequence analysis workflow version 2 (https://github.com/aomlomics/tourmaline). Two different magnetic bead DNA extraction protocols were developed and run on the KingFisher Flex bead-handling robot. PCR preparation, PCR cleanup, DNA dilution, and extraction prep protocols were developed and run on the Opentrons liquid handling robot. The 'omics lab at AOML was modernized, including the integration of the two robots for sample processing.
Title, NGI Number: Building NOAA ‘Omics and Bioinformatics Capacity for Reproducible and Efficient Analysis of Environmental Samples, 19-NGI3-78
Performance Period: 10/01/2019 to 09/30/2022
Funding
support: NOAA Oceanic and Atmospheric Research (OAR) Atlantic Oceanographic and Meteorological Laboratory (AOML)
PI/Co-PI: Luke Thompson, University of Southern Mississippi
NGI Theme(s): Ecosystem Management, Data Management
Collaborators/Partners:NOAA Great Lakes Environmental Research Laboratory, Pacific Marine Environmental Laboratory, Northwest Fisheries Science Center, Southeast Fisheries Science Center
22.‘Omics and bioinformatics tools support marine systems studies, NOAA missions, and the sustainable use of ocean resources. Scientists with expertise in these areas are building a foundation of infrastructure (adapting traditional and cloud HPC systems for bioinformatics), competence (cultivating bioinformatics skills in scientists), capacity (high-throughput analysis and improved standards, workflows, and databases), and application (analysis of ‘omics datasets). Infrastructure includes cloud computing strategy documentation, genomic databases, and repositories for bioinformatics code and ‘omics protocols. Workforce includes ‘omics meetings on topics of broad interest, technical workshops (Python, QIIME 2, metagenomics); and bioinformatics tutorials. Capacity includes reference databases and software to query them, environmental DNA (eDNA) metadata standards, quality control workflows, workflows for amplicon and shotgun sequence data, and a cloud-based eDNA and omics analysis platform. Application includes collection and analysis of fish eDNA datasets and eDNA data from the mesopelagic zone; analysis of harmful algal bloom datasets; and analysis of microbial communities from pelagic (metagenomes for hydrocarbon degradation potential) and benthic (gut microbiomes from methane ice worms) environments. Products include an OAR ‘Omics Data Management Plan, data and metadata standards (https://microbiomedata.org/), data analysis tutorials (https://github.com/aomlomics/tutorials), and an updated Tourmaline amplicon DNA sequence analysis workflow (https://github.com/aomlomics/tourmaline).
Title, NGI
Number :
Advancing Bioinformatics Infrastructure with Standards, Workflows, and
Databases, 20-NGI3-112
Performance Period: 10/01/2020
to 09/30/2022
Funding Source: NOAA Oceanic and Atmospheric Research (OAR) Atlantic Oceanographic and Meteorological
Laboratory (AOML)
PI/Co-PI: Paul Luke Thompson/Paul Mickle, Mississippi
State University
NGI Theme(s) :
Ecosystem Management, Data Management
Collaborators/Partners: Atlantic Oceanographic and
Meteorological Laboratory (AOML)
23.Water quality assessments for Biscayne Bay, FL are being facilitated by improved understanding of nutrient concentrations and the addition of water quality data to hydrodynamic models. Analysis of field samples is helping researchers gain a better understanding of sources for and the spatial distribution of nutrient concentrations in the Coral Gables Waterway, a sub-watershed to Biscayne Bay. A Soil and Water Assessment Tool (SWAT), a watershed model that incorporates Artificial Neural Network Modeling, is being developed. Additionally, researchers develop recommendations for continued partner collaboration and resource management and provide information about processes associated with nutrient inputs to inform additional watershed studies. The Best Management Practices that the researchers created will allow for prioritization of municipal infrastructure projects.
Title, NGI Number: AOML-NGI
South Florida Water Quality Analyses, 21-NGI4-16
Performance Period:
10/01/2016 to 09/30/2026
Funding Source: NOAA
Oceanic and Atmospheric Research (OAR) Atlantic Oceanographic and
Meteorological Laboratory (AOML)
PI/Co-PI: Paul
Mickle, Mississippi State University
NGI Theme(s): Ecosystem
Management, Coastal Hazards, Climate Change and Climate Variability Effects on
Regional Ecosystems
Collaborators/Partners: NOAA
Ecosystem Assessment and Modeling Laboratory within the Ocean Chemistry and
Ecosystems Division at AOML and CIMAS
24.The Gulf Coast Ecosystem Restoration Council (GCERC) funds projects and activities aimed at restoring the ecosystem and economy of the region following the Deepwater Horizon oil spill. To meet their RESTORE Act requirements, the GCERC is developing a metadata tool for their grant recipients and produces publications and communication materials for the science community and public audiences. Staff with expertise in scientific data stewardship, metadata requirements, and graphics design and development at the Northern Gulf Institute will collaborate with the NOAA National Centers for Environmental Information (NCEI) to support the GCERC efforts. They will assist in the development of metadata tools, templates, and standards and provide online training and support for their use by the GCERC and GCERC-funded grant recipients. They will also develop 508 compliant materials and graphics for scientific and technical publications and presentations and public outreach and engagement.
Title, NGI Number: Public
Engagement Support and Metadata Tool and Training for the Gulf Coast Ecosystem
Restoration Council (GCERC), NA18OAR4170438
Performance Period:
09/01/2018 to 08/31/2022
Funding Source: Mississippi-Alabama Sea Grant Consortium (MASGC) via NOAA Oceanic and Atmospheric Research (OAR) via National Centers for Environmental Information (NCEI)
PI/Co-PI: Paul
Mickle, Mississippi State University
NGI Theme(s): Data
Management, Ecosystem Management
Collaborators/Partners: NOAA National
Centers for Environmental Information (NCEI)
25.Enhanced data stewardship, products, and services for NOAA programs that help link science to application is the goal of collaborative efforts of the Northern Gulf Institute and the National Centers for Environmental Information (NCEI). This involves the development and stewardship (including quality control and documentation review) of the long-term coastal data record and support for coastal science products, services, and activities. They will provide scientific and infrastructure support to facilitate environmental investigations, analyses, and predictions for the Gulf of Mexico ecosystem, focusing on habitat characterization, water quality, living marine resources, and coastal hazards and mitigation. They will also provide support for workforce training, updating computer systems, and data management optimization such as the development of reference environmental data records and techniques to synthesize and visualize data, disparate data for product generation, and enhance data discovery. Additionally, they will support extension and outreach of products and information services for federal and state coastal programs and formulation of public policy related to regional restoration activities. The Coastal Ecosystem Data Assembly Center (CEDAC), a tool under development, will be utilized to provide a unified public interface for timely, easy, and convenient public access to the data collections resulting from the Gulf recovery and restoration activities.
Title, NGI
Number: Coastal Science Research, Data Development, and Information
Services (Base Award), NA18OAR4170438
Performance Period: 09/01/2018 to 08/31/2022
Funding Source: Mississippi-Alabama Sea Grant Consortium (MASGC) via NOAA Oceanic and Atmospheric Research (OAR) via National Centers for Environmental Information (NCEI)
PI/Co-PI: Robert
Moorhead/Paul Mickle, Mississippi State University
NGI Theme(s): Data Management, Ecosystem Management
Collaborators/Partners: NOAA
National Centers for Coastal and Ocean Science (NCCOS), Natural Resource Damage
Assessment (NRDA), National Marine Fisheries Service (NMFS), and Exploration
and Research (OER)
26.High performance computing (HPC) supports NOAA missions, including environmental modeling that results in products and services upon which the public depends. The HPC system Orion at Mississippi State University is providing increased computational capability for NOAA research activities and supports 59 unique NOAA projects that involve 524 users who consume approximately 50 million wallclock-hours of CPU time per month. The system is a Dell C6420 cluster containing 1,800 nodes with a total of 3,600 Intel Xeon Gold 6148 processors (72,000 compute cores in aggregate) and 345 terabytes of RAM, a 10 petabyte high performance data storage system, and a Mellanox HDR InfiniBand interconnect. The system ranked as the 60th fastest system in the world in the TOP500 Supercomputer Sites November 2019 list and has a peak performance of 5.5 PetaFLOPS.
Title, NGI
Number: HPC Support for OAR, NA190OAR4590410
Performance Period: 10/01/2017 to 09/30/2023
Funding
Support: NOAA Oceanic and Atmospheric Research (OAR)
PI/Co-PI: Trey
Breckenridge, Mississippi State University
NGI Theme(s): Data Management
National Ocean Service (NOS)
27.Underwater gliders are increasingly involved in routine, innovative, and emergency marine data collection to support operations and research and development efforts. Operating this glider technology requires specialized training. To meet that need, researchers are developing the curricula for a next-level Operator's Certificate (Tier 2) focused on underwater gliders. The certificate course is offered by the University of Southern Mississippi Uncrewed Marine Systems Program. The curricula, which are based on syllabi developed by the university and Perspecta with input from the U.S. Navy and NOAA, support three training courses (each worth three credits) for buoyancy glider operations. The inaugural training program (October 2021) incorporated the new curricula and associated materials, which included a recently acquired Hydroid 1000 m SeaGlider. Current plans include expanding the planning and navigation tools available as the course moves forward.
Title, NGI Number:
Underwater Glider Operations and Science in the Gulf of Mexico: A Public-Private
Partnership, 19-NGI3-93
Performance Period:
09/01/2018 to 07/31/2022
Funding Source: NOAA
National Ocean Service (NOS)
PI/Co-PI: Steven
Howden, University of Southern Mississippi
NGI Theme(s):
Ecosystem Management
Collaborators/Partners: The Command Naval Meteorology and Oceanography Command and
subcommand of the Naval Oceanographic Office, the Naval Undersea Warfare Center
of the Naval Sea Systems Command, the Gulf of Mexico Coastal Ocean Observing
System, and Perspecta
28.Uncrewed Surface Vessels (USVs) provide a safe and efficient method for data collection that support hydrographic and oceanographic survey operations. Researchers acquired a CWorker 5 USV Sea Eagle, which was demonstrated at several events and research cruises. The Saildrone USV Surveyor was outfitted with a shallow water multibeam system and Inertial Navigation System and collected high resolution bathymetric data. The Saildrone USV Profiler was outfitted with a sound velocity profiler on a winch system, showing good potential for use in remote areas. A Seafloor Systems Echoboat USV was gifted to the center and outfitted with a multibeam sonar and batteries to match systems used by NOAA’s Navigation Response Teams and is being used as an experimentation and troubleshooting platform. Research continues into use of a multi-Global Navigation Satellite System (GNSS) for precise positioning. Lessons learned related to USV use are being developed for inclusion in Standard Operating Procedures. Also being developed are a local sub-net of GNSS receivers to compare with GCGC Real-Time Network.
Title, NGI Number:
University of Southern Mississippi Mapping Center, 18-NGI3-58
Performance Period:
10/01/2016 to 07/31/2022
Funding Source: NOAA
National Ocean Service (NOS)
PI/Co-PI: Brian Connon, University of Southern Mississippi
NGI Themes:
Ecosystem Management, Coastal Hazards
Collaborators/Partners: NOAA
Office of Coastal Survey (OCS), Gulf Coast Geospatial Center, ASV-L3 ASV
Global, Kongsberg, R2Sonic, Saildrone, and Norbit
29.Ecosystem-based management (EBM) is an approach that resource managers have growing confidence in as well as the capacity to apply it. Scientific publications describe EBM application and supporting practices; however, there is little understanding for how EBM is used and understood in practice by resource managers in the U.S. Gulf of Mexico region. Researchers are addressing this knowledge gap by developing baseline data and information regarding if and how resource managers in the region actually use and understand EBM. They will interview and survey resource managers and develop case studies of when science has been created, used, and applied directly for EBM practices. Resource managers and case studies will include ecosystem-based fisheries management projects, marine ecosystem planning, watershed management and planning, and more general resource management projects. This work will provide a comprehensive understanding of the state of EBM practices and identify specific findings, insights, and generalizations about EBM.
Title, NGI Number: Assessing Ecosystem-Based Management Practices and Science-Informed Decision-Making in the Gulf of Mexico, 21-NGI3-135
Performance
Period: 08/01/2021 to 05/31/2022
Funding Source: NOAA National Ocean Service (NOS)
PI/Co-PI: Kathleen
Ernst, Florida State University
NGI Themes:
Ecosystem Management, Effective and Efficient Data Management Systems
Supporting a Data-Driven Economy
Collaborators/Partners: NOAA
Resources and Ecosystems Sustainability, Tourist Opportunities, and Revived
Economies (RESTORE) Science Program
30.Monitoring the Gulf of Mexico hypoxic zone helps advance the science that underpins its management by scientists, modelers, resource managers, and other stakeholders. To measure progress toward achieving nutrient management goals set out in the Gulf Action Plan, researchers conduct regular field verification of the hypoxic zone both east and west of the Mississippi River, collecting data during annual research cruises and information about watershed activities that affect downstream water quality and habitats. Those data are used to develop models that inform the Hypoxia Task Force goals for nutrient reduction to conduct forecasts and hindcasts with enhanced biogeochemical and hydrodynamic models. Recently, standard operating procedures were finalized for conducting the annual monitoring cruise and information was made available to resource managers who can provide guidance for restoration projects. Efforts continue to foster communication and coordination among working groups focused on nutrients in the Mississippi River, the Cooperative Hypoxia Assessment and Monitoring Program (CHAMP), partners, and stakeholders.
Title, NGI Number: Hypoxia
National Office Technical Assistance, Observations, Monitoring, and
Coordination, 21-NGI4-09
Performance Period:
10/01/2016 to 09/30/2022
Funding Source: NOAA
National Ocean Service (NOS)
PI/Co-PI: Paul
Mickle, Mississippi State University
NGI Theme(s):
Ecosystem Management, Coastal Hazards
Collaborators/Partners:
Louisiana office of Coastal Protection and Restoration; Mississippi Department
of Marine Resources; Mississippi Department of Environmental Quality; NOAA
NCCOS, NWS, and NMFS; Louisiana Sea Grant; Minnesota Sea Grant; Louisiana
Universities Marine Consortium (LUMCON); Lake Pontchartrain Basin Foundation;
the University of Southern Mississippi; and Dauphin Island Sea Laboratory
31.The promotion of geospatial technology to improve coastal communities is the goal of researchers involved with workforce training for technical and nontechnical users in geographic information systems (GIS), development of web-based geospatial tools for enhanced visualization and data dissemination, and creation of geospatial data. This effort serves the Mississippi Department of Environmental Quality (MDEQ) with development of high-resolution hydrography datasets. Two mobile classrooms offer workshops with both commercial and open source software covering topics from introductory GIS to multi-user database systems (https://www.gri.msstate.edu/GEO/). GeoCoast 3D Coastal Inundation Visualization application evaluates impacts of sea level rise on traffic patterns and infrastructure accessibility (https://geoproject.hpc.msstate.edu/GeoCoast3D/). A web-based GIS application for public use is compatible with all operating systems and provides tools to create data and text overlays as well as upload spatial datasets from GPS units (https://geoproject.hpc.msstate.edu/GeoDawg). Current application development efforts are focused on augmented reality for GeoCoast and multi-criteria decision analysis for coastal watershed erosion.
Title, NGI Number: Regional
Geospatial Modeling, and NA19NOS4730207
Performance Period:
10/01/2016 to 09/30/2024
Funding Source: NOAA
National Ocean Service (NOS)
PI/Co-PI: John
Cartwright, Mississippi State University
NGI Themes: Coastal
Hazards, Ecosystem Management
Collaborators/Partners: Coastal
Conservation and Restoration Program, and the Marine Fisheries Ecology Program
at the Mississippi State Coastal Research and Extension Center
National Environmental Satellite, Data, and Information Service (NESDIS)
32.Satellite products for improved thunderstorm predictions that provide advanced notice of heavy rain, high winds, and lightening is the goal of researchers making advancements to NOAA GOES-R Convective Initiation (CI) products that the National Weather Service (NWS) forecasts use. The “R” series of Geostationary Operational Environmental Satellite (GOES-R) provides real-time, high-resolution imagery and atmospheric measurements of Earth’s weather, oceans and environment, and monitoring of solar activity and space weather. Researchers maintain and improve the 0-1 hour GOES-R CI algorithm, provide product fields to government users of CI nowcast products, and maintain data feeds to NASA and NOAA. Updates and improvements allow the CI algorithm to work on mobile devices, make imagery more viewer friendly, identify potential false signals due to snow cover, and resolve issues related to domain changes and data ingestion. The unique nature of the algorithm to identify, track, and predict cloud growth across a satellite image has been enhanced. Under development is script to download data from Amazon Web Services for CI Product to run at night. This effort includes coordination with NASA’s Short-term Prediction Research and Transition (SPoRT) Center to facilitate transfer of CI-related products to end users.
Title, NGI Number: GOES-R
Convective Initiation Product Support, 20-NGI3-129
Performance Period: 08/01/2020 to 07/31/2022
Funding Source: NOAA
National Environmental Satellite, Data, and Information Service (NESDIS)
PI-Co-PI: John Mecikalski, University of Alabama Huntsville
NGI Themes: Coastal
Hazards
Collaborators/Partners: NOAA
Cooperative Institute for Research in the Atmosphere (CIRA) and NASA Short-term
Prediction Research and Transition (SPoRT) Center
33.The Deep-Sea Coral Research and Technology Program (DSCRTP) collects, analyzes, and makes publicly available coral and sponge occurrence data and related physical/biological data; the program also develops products using those data such as predictive model outputs and publications. Scientists with the Northern Gulf Insitute and National Centers for Environmental Information (NCEI) are collaborating with DSCRTP scientists to develop a comprehensive end-to-end data management system that will identify, inventory, and provide stewardship of program-generated data from collection to long-term preservation. This effort involves development of the NOAA National Database for Deep Sea Corals and Sponges and innovative enhancements to its public interface for effective access to web mapping applications, search tools, and datasets (including photographic and video imagery and program activities). Additionally, code that are developed as well as tutorials associated with database features will be published. Data and graphical representation or analyses will be provided to support DSCRTP reports, publications, and to respond to external user requests (e.g., Fisheries Management Councils).
Title, NGI
Number : Support
to the Mission, Growth, and Impact of the Deep-Sea Coral Research and
Technology Program (DSCRTP), 21-NGI4-14
Performance
Period:
10/01/2021 to 09/30/2026
Funding
Source:NOAA National Environmental Satellite, Data, and
Information Service (NESDIS)
PI/Co-PI: Just Cebrian/Paul Mickle, Mississippi State
University
NGI Theme(s): Data
Management, Ecosystem Management
Collaborators: NOAA National Marine Fisheries, Ocean
Exploration and Research Program
34.Exploring the deep ocean for national benefit is the mission of the NOAA Ocean Exploration (OER) program. Researchers with the Northern Gulf Institute are collaborating with the National Centers for Environmental Information (NCEI) to provide subject matter expertise for the development, enhancement, maintenance, and public availability of OER oceanographic data and video collections (Digital Atlas, Okeanos Explorer Atlas, Video Portal, ROV/Cruise Landing Pages, Benthic Animal Guide, and GIS services). They will provide stewardship for the storage, tracking, use, and policy-compliance of its collections working with the NCEI Cruise Information Management System (CIMS), Video Information Management Systems (VIMS), and Sampling Operations Database Application (SODA). This effort will report on and support field campaigns, data acquisition, and disposition; make recommendations for data management and use; assure quality of and archive incoming data; support development of new archive pipelines; and deliver data for custom requests. It will also generate annotated metadata records to increase data discoverability and reusability, present results and products to the ocean science community, and coordinate outreach activities through the Stennis Exploration Command Center.
Title, NGI Number: Support
to the Mission, Growth, and Impact of the Ocean Exploration and Research
Program, 21-NGI4-10
Performance Period: 10/01/2021
to 09/30/2026
Funding Source: NOAA
National Environmental Satellite, Data, and Information Service (NESDIS)
PI/Co-PI: Just
Cebrian/Paul Mickle, Mississippi State University
NGI Theme(s):Data Management, Climate Change and Climate Variability
Effects on Regional Ecosystems; Ecosystem Management
Collaborators: NOAA
National Centers for Environmental Information (NCEI)
35.The Coastal Ecosystem Data Assembly Center (CEDAC) is being developed as a resource for scientific data exchange that serves the needs of both data providers and users, including access to data management tools and training and a portal to upload data for archive staging. This effort will involve stewardship of the long-term coastal data record and its continued development to support Gulf of Mexico ecosystem research. The CEDAC will also provide a unified interface for timely, easy, and convenient public access to data collections resulting from recovery and restoration activities that followed the Deepwater Horizon oil spill. Innovative data stewardship solutions to enhance NOAA capabilities with data management, visualization, and dissemination will be developed as well as methods and tools to improve data discovery and access. Sea Grant extension specialists will conduct needs assessments with end users before product and services are developed and again afterwards to gain insights into making them more useful and user friendly. Sea Grant will also host trainings and workshops to increase awareness and use of CEDAC products and information services.
Title, NGI Number: Enhanced
Coastal Data Development and Information Services: CEDAC, 17-NGI3-35
Performance Period:
07/01/2017 to 06/30/2022
Funding Source: NOAA National Environmental Satellite, Data, and
Information Service (NESDIS)
PI/Co-PI: Robert
Moorhead/Paul Mickle, Mississippi State University
NGI Theme(s): Data
Management, Ecosystem Management
Collaborators/Partners: NOAA
NCEI Oceanographic and Geophysical Science and Services Division (OGSSD) and
the Mississippi-Alabama Sea Grant Consortium
36.The endangered smalltooth sawfish (Pristis pectinate) and the reduction or prevention of their mortality is the top action in the National Marine Fisheries Service Recovery Plan. Sawfishes are large shark-like rays with an elongated blade-like snout that can become entangled in gillnets and trawls, a leading cause of their population decline. To address NOAA recovery actions, researchers conduct sampling trips to attach SPOT satellite tags on adult smalltooth sawfish and collect life history information. The data will improve understanding about the population and reproductive status of adult sawfish, the habitats they frequent, and if these areas meet criteria for Critical Habitat listing. The data may reveal spatial and temporal distribution patterns, including mating sites and long-term residency and migration patterns, and if these occur in areas of commercial trawling and longlining. Knowing these connections can provide guidance on actions to reduce bycatch mortality, such as seasonally limiting access to specific areas and habitats. This effort includes the data collection on scalloped hammerhead sharks for ongoing federal stock assessments and conservation awareness through education and outreach.
Title, NGI Number: Determination of Movement patterns and Reproductive Status of Adult Smalltooth Sawfish (and Scalloped Hammerhead Sharks),
21-NGI4-08
Performance Period:
10/01/2016 to 09/30/22
Funding Source: NOAA
National Marine Fisheries Service (NMFS)
PI/Co-PI: Dean
Grubbs, Florida State University
NGI Themes:
Ecosystem Management, Climate Change and Climate Variability Effects on
Regional Ecosystems
Collaborators/Partners: NOAA
Office of Protected Resources (OPR), NOAA Fisheries, Bimini Biological Field
Station, Disney Conservation Fund, Havenworth Coastal
Conservation, and University of North Florida
37.Artificial Intelligence (AI) applied to fisheries digital media collected for assessments is making the data more assessable and usable. Researchers are organizing the media, which are housed at various NOAA NMFS laboratories and partnering agencies in the southeast US, and using AI to automate the detection and identification of fish species from video. They are compiling and archiving image libraries and associated manual annotations, collecting and digitizing historic video, and comparing human-based annotations with those generated by Video Image Analytics for the Marine Environment (VIAME) algorithms, which speeds up video processing time and quality control procedures. The annotation library and model iterations for fish detection and identification are available for viewing and use on Kitware’s VIAME web application. The researchers share results with NOAA fisheries labs to demonstrate how to use the fish tracking models and the VIAME applications for their project needs. The model’s ability to classify and track reef fish has improved, especially for high priority species such as snappers and groupers.
Title, NGI Number: Video
and Imagery Data Management for Fisheries Assessments, 21-NGI4-11
Performance Period: 08/01/2020 to 09/30/2022
Funding Source: NOAA
National Marine Fisheries Services (NMFS)
PI/Co-PI: Paul
Mickle/Jack Prior, Mississippi State University
NGI Theme(s): Data
Management
Collaborators/Partners: NOAA
NMFS
38.The archival and storage of plankton samples for the Southeast Area Monitoring and Assessment Program (SEAMAP) is a continuing service provided by the University of Southern Mississippi at their NASA Stennis Space Center facility. The facility also stores samples collected during the NOAA Natural Resource Damage Assessment (NRDA) effort following the Deepwater Horizon oil spill. The Stennis facility provides a safe and secure archive for the plankton samples, which comprise the longest plankton time series for the Gulf of Mexico. Samples are available for loan to researchers upon request.
Title, NGI Number:
Continuation of Secure Archival Storage for NOAA/NMFS Preserved Specimens at
USM's Plankton Archival Facilities, 20-NGI3-130
Performance Period:
04/01/2017 to 07/31/2022
Funding Source: NOAA
National Marine Fisheries Service (NMFS)
PI/Co-PI: Frank Hernandez,
University of Southern Mississippi
NGI Theme(s): Data
Management, Ecosystem Management
Collaborators/Partners:
Southeast Area Monitoring and Assessment Program (SEAMAP) and NOAA Natural
Resource Damage Assessment (NRDA)
National Weather Service
39.Improving tornado detection is the goal of researchers who are examining the effectiveness of infrasound, sound at wave frequencies beyond what humans can hear, to detect tornadoes. They are analyzing past tornadic storms to determine if attributes such as lightning and airflow can provide infrasound sources. After analyzing the 3-D airflow of the March 19, 2018 supercell storm and 60 km EF-2 tornado that passed within 10-30 km of three National Center for Physical Acoustics (NCPA) infrasound detector arrays, they found that the entire tornadic phase was detectable by ARMOR radar (University of Alabama at Huntsville), SR3 radar (University of Oklahoma), and the WSR-88D KHTX radar (National Weather Service). Once the dual Doppler analysis is complete, they will analyze lightning characteristics and integrate their findings with available data from wind profiling systems and radiosondes to develop a larger representation of the storm and its environment.
Title, NGI Number:
Evaluation and Improvements of Tornado Detection Using Infrasound Remote
Sensing: Comparative Analysis of Infrasound, Radar, Profiler, and
Meteorological Data Sets, and Potential Impacts on NOAA/NWS, 18-NGI3-59
Performance Period: 10/01/2018
to 07/31/2022
Funding Source: NOAA National
Weather Service (NWS)
PI/Co-PI: Kevin Knupp, University of Alabama at Huntsville
NGI Theme(s): Coastal
Hazards
Collaborators/Partners:
University of Mississippi NCPA
40.Atmospheric River Reconnaissance (AR Recon) missions provide data, visualization, and web support to the NOAA Environmental Modeling Center (EMC) for their weather, water, and climate predictions. AR are weather phenomena that drive heavy rain events that often cause floods. Researchers completed a successful AR Recon mission using sensitivity tools to identify potential flight paths and developed several data impact evaluation tools based on AR analysis, including the first version of a new high resolution regional model called the Atmospheric River Analysis and Forecast System (AR-AFS). Data impact evaluation is done by comparing module runs of the Global Forecast System for control (with AR Recon data) and denial (without AR Recon data), and an AR analysis is done using data from the Global Ensemble Forecast System.
Title, NGI Number:
Operational Data Impact Assessment and Support for Atmosphere River
Reconnaissance, 21-NGI4-12
Performance Period:
10/01/2020 to 09/30/2022
Funding Source: NOAA
National Weather Service (NWS), National Centers for Environmental Prediction
(NCEP), and Environmental Monitoring Center (EMC)
PI/Co-PI: Keqin
Wu, Mississippi State University
NGI Theme(s): Climate Change and Climate Variability Effects on Regional
Ecosystems, Coastal Hazards
Collaborators/Partners: Center for
Western Weather and Water Extremes (CW3E) and University of California San
Diego
Recently Completed Projects
This page provides summaries of projects completed in the last three years (2021, 2020, 2019), organized by funding source. The first few words of each project summary are bolded so readers can see the issue or topic that a project addressed or a key component (e.g., technology or method) that it employed. Projects completed in years prior are available in the Projects & Publications Search (under the Research Tab).
PIs/Co-PIs: If your project summary needs correction, please send an email to maggied@ngi.msstate.edu.
Funding Sources:
- Oceanic and Atmospheric Research (15 projects)
- National Ocean Service (0 projects)
- National Environmental Satellite, Data, and Information Service (4 projects)
- National Marine Fisheries Service (1 projects)
- National Weather Service (4 projects)
- Other-Funded (2 projects)
National Ocean Service (NOS)
No projects completed in 2021, 2020, 2019
National Environmental Satellite, Data, and Information Service (NESDIS)
16.Video data of the Gulf of Mexico seafloor are collected by NOAA using the remotely operated vehicle (ROV) Deep Discover aboard the Okeanos Explorer, and researchers have enhanced access to and usability of this data. They generated and tested Python scripts that created maps of the seafloor viewshed and the seafloor substrate distribution along the full extent of the ROV dives. The scrips extracted ROV navigation and video annotation data from NOAA datasets and yield GIS digital maps that comply with the Coastal and Marine Ecological Classification Standard (CMECS). The researchers also generated standard operating procedures for the Python scripts that automate the generation of color-coded seafloor substrate maps and resultant GIS polygon files from ROV and shipboard data and will make all project code available through a GitHub public repository. The ROV video data provided the base for a model of comprehensive digital mapping of seafloor environmental parameters, including ecological observations.
Title, Number:
Geospatial Analysis of Deep-Sea Environments using ROV Video Data with the
Coastal and Marine Ecological Classification Standard (CMECS), 19-NGI3-79
Performance Period:09/01/2019
to 08/31/2021
Funding Source: NOAA
National Environmental Satellite, Data, and Information Service (NESDIS)
National Centers for Environmental Information (NCEI)
PI/Co-PI: Adam
Skarke/Jacob Freemen, Mississippi State University
NGI Themes: Data
Management
Collaborators/Partners: NOAA
NCEI, National Centers of Coastal Ocean Science (NCCOS), Office of Ocean
Exploration and Research (OER), and the Deep-Sea Coral Research and Technology
Program (DSCRTP)
17.Calculations for tropical cyclone intensification was sought by researchers using a product that merges Geostationary Lightning Mapper (GLM) data with ground-based observations in a Bayesian manner for a ratio of intracloud flashes to cloud to ground flashes. They trained and validated a random forest model to estimate the probability a flash is intracloud, based on optical attributes, and applied the model to tropical cyclone case studies for 2019 and 2020 to investigate its relationship to tropical cyclone intensification. An analysis of the case studies followed along with the development of a GLM beta data set with near real time capabilities that contain the probability a flash is intracloud. Their work suggests there is a signal in the cloud flash fraction that relates to tropical cyclone intensification. The cloud flash fraction (CFF) product will be developed further into the operational environment, including the exploration of suitable time steps in which to display the product to forecasters.
Title,
Number: Bayesian Merging of GLM Data with Ground-Based Networks, 19-NGI3-85
Performance Period:08/01/2017 to 07/31/2020
Funding Source: NOAA National
Environmental Satellite, Data, and Information Service (NESDIS)
PI/Co-PI: Phillip
Bitzer, University of Alabama Huntsville
NGI Themes: Climate
Change and Climate Variability Effects on Regional Ecosystems, Coastal Hazards
Collaborators/Partners: NOAA
National Weather Service (NWS)
18.The on-orbit calibration and validation of satellite ocean products was established for the VIIRS (Visible Infrared Imaging Radiometer Suite) on the NOAA Suomi National Polar–Orbiting Preparatory Project (SNPP) satellite. This effort supported the improvement of ocean color products (water leaving radiance, chlorophyll, and bio-optical properties) that enhance the monitoring of coastal and open waters. As members of the NOAA Joint Polar Satellite System (JPSS) calibration and validation (calval) team, this project team coordinated the calibration of ocean satellite products and tracking the stability of the VIIRS sensor and satellite products. They investigated the sensor characterization and processing software used to derive ocean products and to evaluate the long-term trends of the sensor calibration for processing software. They collected measurements for several cruises; maintained a data stream on the wave-current information system (WavCIS) for NOAA, NASA, and others; and provided calibration data sets for validation of ocean color products for the NOAA VIIRS sensor. The WavCis platform was updated to sensor SN638 and matchup of VIIRS inherent optical properties with cruise flowthrough data for the Bonnie Carrier cruise (Feb 2016) and other cruises that year and in 2017. The calval team participated in the Okeanos Explorer 2018 cruise and collected in situ data for VIIRS calibration and validation followed by data analysis with NOAA team cruise members.
Title,
Number: Calibration and Validation of NOAA VIIRS Ocean Products for
Monitoring Oceans, 18-NGI3-51
Performance Period:
10/01/2019 to 12/31/2019
Funding Source: NOAA National Environmental Satellite, Data, and
Information Service (NESDIS)
PI/Co-PI: Bob Arnone,
University of Southern Mississippi
NGI Themes: Data
Management, Ecosystem Management
Collaborators/Partners: NOAA-STAR
Center for Satellite Applications and Research, NASA Goddard, Naval Research
Laboratory, Louisiana State University, City College of New York, National
Institutes for Standards and Technology, University of Southern Florida, UMB-
University of Mass Boston, University of Miami, Oregon State University,
Columbian University (LAMONT), Joint Research Council (Italy), Gulf of Mexico
Research Initiative USM CONCORDE project, NOAA National Marine Fishers Service,
and Naval Research Laboratory
19.Scientific support for partner agencies was provided by the Northern Gulf Institute (NGI) through expertise in data management and stewardship and development of products and services for coastal ecological and observational data and information. The NGI provided data management expertise for the National Marine Fisheries Service Deep Sea Coral Research and Technology Program (DSCRTP), National Centers for Coastal and Ocean Science, the Office of Response and Restoration working with the Natural Resources Damage Assessment, and the Ocean Exploration and Research Program. The NGI reviewed and updated the Data Management Best Practices document for the National Centers for Environmental Information (NCEI) Coastal Data Development (CDD) Program to support the long-term coastal data record and coordinated data management and visualization activities across Ocean Exploration and Research (OER) Divisions.
Title, Number: Enhanced
Coastal Data Development and Information Services: Scientific Support for
Partner Agencies, 17-NGI3-38
Performance Period:
07/01/2017 to 09/30/2019
Funding Source: NOAA National Environmental Satellite, Data,
and Information Service (NESDIS)
PI/Co-PI: Steve
Ashby, Mississippi State University
NGI Themes: Data
Management, Ecosystem Management
Collaborators/Partners: NOAA RESTORE Science Program; RESTORE Council; National Academies of Science Gulf
Research Program; MS/AL Sea Grant Consortium; the Damage Assessment,
Remediation, and Restoration Program (DARRP); Naval Oceanographic Office;
Leidos for Advanced Naval Technology Exercise; Florida Fish and Wildlife
Research Institute; Alabama Department of Public Health; Mississippi Department
of Marine Resources; Texas Parks and Wildlife Department; Gulf of Mexico
Alliance; and Gulf of Mexico Research Initiative and GRIIDC.
National Marine Fisheries Service (NMFS)
20.Coastal hydrographic water column data are available as a continuous time series of temperature, salinity, depth, and current velocity collected from 2004 to the present from a small coastal ocean observing system (FOCAL WE-CP buoy) 20-25 kilometers southwest of Mobile Bay. This mooring operation represents the longest running time series of coastal hydrographic water column data in the Mississippi Bight and one of the longest in the entire Gulf of Mexico. However, data collection has typically been derived from process orientated studies, providing support for discrete periods of time, which has generated inconsistencies in data processing and organization. After several data management actions (organize the historic data collections from the mooring system and provide direct access to these historical data in conjunction with the real-time data from the FOCAL WE-CP buoy), the data are now available at https://accession.nodc.noaa.gov/0203749. The project increased the application of the historical data by new users from research institutions across the U.S. as well as by local and regional agencies to address issues related to ecosystem dynamics (e.g. fisheries populations, hypoxia) and extreme events (marine heatwaves, hurricanes).
Title, Number: Improving Historical Data Access for Coastal
Application, 18-NGI3-61
Performance
Period:
10/01/2018 to 06/30/2020
Funding
Source: NOAA National Marine Fisheries Service (NMFS)
PI/Co-PI: Brian Dzwonkowski, Dauphin Island Sea Lab
NGI Themes: Data Management, Ecosystem Management
Collaborators/Partners: NOAA National Centers of Environmental
Information (NCEI)
National Weather Service (NWS)
21.The NOAA National Data Buoy Center (NDBC) has an improved monthly data archiving process that now takes less time and has fewer errors. These improvements are the result of two new custom-made software packages (Java GUI applications using JavaFX and NetBeans) with python scripts, guides, and one-page summaries that are user-friendly, reliable, efficient, and sustainable. The software and scripts streamline the overall archiving process, generate missing sensor metadata, authenticate station location, visualize metadata and processed data, and perform quality control. The improvements allow NDBC to consistently disseminate high quality data collected by their C-MAN and Weather Buoy coastal ocean observing networks. Additionally, this effort added valuable sensor metadata and important station location authentication features.
Title, Number:
Improvements to NDBC Weather Buoy/C-MAN archive process, 19-NGI3-75
Performance Period:
09/01/2019 to 02/28/2021
Funding Source: NOAA National
Weather Service (NWS)
PI/Co-PI: Just
Cebrian, Mississippi State University
NGI Themes: Data
Management
Collaborators/Partners: NOAA
NDBC
22.The Social
Science Applications for Coastal Resiliency (SSACR) curriculum was
developed and delivered as a week-long course to weather, water, environmental,
and emergency management professionals working in various NOAA programs and
offices. Participants learned about the structure and methodologies of applied
social science research that complements the needs of the weather and water
enterprises to incorporate human factors analysis. The course included readings
followed by lectures and discussion about the nature of social science
research, the ethics of such research, statistics used in data analysis, the
tools and techniques used by social scientists, case examples, and how
reliability and validity are addressed in various methods. Applied examples
covered the societal understanding of water, heavy downpour events, mudslides,
debris flows, droughts, and water quality. Preparing NOAA staff to think about
how to pursue data and evidence about human behavior in the pursuit of their
scientific duties in collaboration with social scientists will enhance their
operations.
Title,
Number: Social Science Applications for Coastal Resiliency (SSACR),
19-NGI3-74
Performance Period:
10/01/2019 to 12/31/2020
Funding Source: NOAA National Weather Service (NWS)
PI/Co-PI: Laura
Myers, Dauphin Island Sea Lab
NGI Themes: Coastal
Hazards
Collaborators/Partners: Various
NOAA programs
23.Understanding environments conducive to significant tornadoes was the goal of researchers assessing variability and the role of surface heterogeneity and mesoscale boundaries on the southeastern severe storm environment using mobile tropospheric soundings during the VORTEX-SE project. Completed were atmospheric profiles across a distinct agriculture / forest boundary where improvements in local environmental shear were noted over the agricultural region, likely due to a slightly less turbulent flow in the lower planetary boundary layer (PBL). However, surface instability across this boundary showed distinct changes where the agricultural region showed nearly twice the convective available potential energy when compared to the forested region. The greater instability was generated through slight increases in low-level atmospheric moisture over the agricultural landscape. While limited in scope, this suggests that updrafts rooted in the PBL may respond to sudden increases or decreases in instability which has been tied to tornado genesis.
Title, Number: Mesoscale
Variability Experiment Using Full Tropospheric Soundings, 18-NGI3-50
Performance Period:
10/01/2018 to 09/30/2019
Funding Source: NOAA
National Weather Service (NWS)
PI/Co-PI: Mike
Brown, Mississippi State University
NGI Themes: Climate
Change and Climate Variability Effects on Regional Ecosystems, Coastal Hazards
Collaborators/Partners:
25.Atmospheric River Reconnaissance (AR Recon) missions provide data, visualization, and web support to the NOAA Environmental Modeling Center (EMC) for their weather, water, and climate predictions. AR are weather phenomena that drive heavy rain events that often cause floods. Researchers completed a successful AR Recon mission using sensitivity tools to identify potential flight paths and developed several data impact evaluation tools based on AR analysis, including the first version of a new high resolution regional model called the Atmospheric River Analysis and Forecast System (AR-AFS). Data impact evaluation is done by comparing module runs of the Global Forecast System for control (with AR Recon data) and denial (without AR Recon data), and an AR analysis is done using data from the Global Ensemble Forecast System.
Title, NGI Number:
Operational Data Impact Assessment and Support for Atmosphere River
Reconnaissance, 20-NGI3-115
Performance Period:
10/01/2020 to 12/31/2021
Funding Source: NOAA
National Weather Service (NWS), National Centers for Environmental Prediction
(NCEP), and Environmental Monitoring Center (EMC)
PI/Co-PI: Robert
Moorhead/Keqin Wu, Mississippi State University
NGI Theme(s): Climate
Change and Climate Variability Effects on Regional Ecosystems, Coastal Hazards
Collaborators/Partners: Center
for Western Weather and Water Extremes (CW3E) and University of California San
Diego
Other-Funded Projects
25.Improved
representation of mixing processes in oil plume dispersal models was
sought by researchers who investigated linkages between the vertical
distribution of turbulent mixing, bathymetry characteristics, and physical
forcing phenomena of the northern Gulf of Mexico. Using gliders, a
vertically-sampling turbulence profiler, a CTD Rosette, and moorings, field
data were collected on ocean turbulence, velocity, and stratification from the
surface to 1000 m water depth. The anticipated linkages were expected to show a
quasi-stationary response to quasi-stationary flow over the steep and rough
topography of the northern Gulf of Mexico. Instead, based upon moored time
series observations, the response at the local diurnal (once a day) / inertial
(once a pendulum day) time scale is fundamental. For the modeling community,
this means that to get the instabilities right, the structure of the boundary
layer must be right, and even ultra-high regional models lack this resolution.
The turbulence and high frequency moored data enable a better understanding of
the boundary layer structure in the northern Gulf of Mexico. This insight has
been and is being communicated to the scientific community.
Title, Number:
Understanding How the Complex Topography of the Deep-water Gulf of Mexico
Influences Water-column Mixing Processes and the Vertical and Horizontal
Distribution of Oil and Gas after a Blowout, 16561900/A101430
Performance Period: 01/01/2019
to 12/31/19
Funding Source: Gulf of
Mexico Research Initiative
PI/Co-PI: Zhankun
Wang, Mississippi State University
NGI Themes: Coastal
Hazards
Collaborators/Partners: Texas
A&M University, Woods Hole Oceanographic Institution
26.The Gulf of Mexico Research Initiative (GoMRI) received administrative support from NGI staff with expertise in information systems design and management and science communication. They developed and managed the GoMRI Research Information System or RIS (https://research.gulfresearchinitiative.org) and the Education Website (https://education.gulfresearchinitiative.org/); produced a steady flow of vetted, original content for the GoMRI website (https://gulfresearchinitiative.org/); and provided communication and administrative support for the GoMRI Research Board and Chief Scientist. The RIS tracked programmatic data for all GoMRI funded research projects, personnel, and publications and presented that information in a public web portal. The Education Website houses resources for formal and informal education use that were developed through GoMRI-funded activities. The website articles provided content for other GoMRI outreach efforts, such as social media channels, quarterly newsletters, bi-weekly eNews, and presentations. Additionally, they co-authored several papers published in the 2021 Oceanography special issue featuring GoMRI (https://tos.org/oceanography/issue/volume-34-issue-01).
Title,
Number: Gulf of
Mexico Research Initiative Support Project, 231637-00
Performance
Period:01/01/2017 to 12/31/2021
Funding
Source: Gulf of
Mexico Research Initiative via Gulf of Mexico Alliance
PI/Co-PI: Jay Ritchie/Maggie Dannreuther, Mississippi
State University
NGI Themes: Climate Change and Climate Variability
Effects on Regional Ecosystems, Coastal Hazards, Ecosystem Management, Data
Management
Collaborators/Partners: American Institute of Biological Sciences,
Consortium for Ocean Leadership, Sea Grant programs across the Gulf of Mexico
region, and Texas A&M University Corpus Christy
Projects & Publications Search

Under Development!
The project and publications search tool is currently a beta version. For questions/concerns related to the functionality of this tool, please email Clay Hill (chill@hpc.msstate.edu).
Entries for projects and publications are currently being added, starting with most recent and working back. For content-related questions/concerns, please email Maggie Dannreuther (maggied@ngi.msstate.edu).
Proposal Development Guidance
A Principal Investigator wishing to submit a proposal through NGI should work with the sponsored programs office at his/her institution to submit the proposal package electronically to the Program Office. The complete proposal package should consist of the following:
- Cover Sheet
- Detailed Budget in Microsoft Excel format (template)
- Detailed Budget Narrative (NOAA budget guidelines)
- Project Narrative to include the following:
- Description of Work - Research Plan
- Introduction/Narrative - Information contained in this section of the proposal should provide background information and significance of the proposed research.
- Specific aims/milestones - Information contained in this section of the proposal should provide the proposed goals and expected outcomes. It should also show when the researcher expects to reach the proposed goals and outcomes.
- Relationship to NOAA Goals - Information contained in this section of the proposal should show how the proposed research relates to the current NOAA Research Goals identified by the Cooperative Institute.
- Description of project performance sites - List facilities that may be used outside of the Cooperative Institute where research will take place that is directly related to the proposed research - this would not include consortium members.
- List of senior and key personnel - Describe their specific role as it relates to the specific aims/milestones.
- Data Management Plan - Proposals must include a Data Management Plan (DMP) of up to two pages describing how these
requirements will be satisfied. The DMP should be aligned with the Data Management Guidance provided by NOAA . The contents of
the Data Management Plan (or absence thereof), and past performance regarding such plans, will be considered as part of proposal
review. A typical plan should include descriptions of the types of environmental data and information expected to be created
during the course of the project; the tentative date by which data will be shared; the standards to be used for data/metadata
format and content; methods for providing data access; approximate total volume of data to be collected; and prior experience
in making such data accessible. The costs of data preparation, accessibility, or archiving may be included in the proposal
budget unless otherwise stated in the Guidance.
Accepted submission of data to the NOAA National Centers for Environmental Information(NCEI) is one way to satisfy data sharing requirements; however, NCEI is not obligated to accept all submissions and may charge a fee, particularly for large or unusual datasets.
Environmental data and information collected or created under NOAA grants or cooperative agreements must be made discoverable by and accessible to the general public, in a timely fashion (typically within two years), free of charge or at no more than the cost of reproduction, unless an exemption is granted by the NOAA Program. Data should be available in at least one machine-readable format, preferably a widely-used or open-standard format, and should also be accompanied by machine-readable documentation (metadata), preferably based on widely-used or international standards.
Proposal submitters are hereby advised that the final pre-publication manuscripts of scholarly articles produced entirely or primarily with NOAA funding will be required to be submitted to NOAA Institutional Repository after acceptance, and no later than upon publication. Such manuscripts shall be made publicly available by NOAA one year after publication by the journal.
- Description of Work - Research Plan
Questions related to the proposal submission process should be directed to Whitley Alford, NGI Program Administrator .
Funding Acknowledgement for Publications
Researchers who are preparing publications for work conducted with funding from NOAA through the Northern Gulf Institute (NGI) should use the following accreditation:
For work supported by funding awarded for the period 1 Oct 2016 through 30 Sept 2021: This work was supported by award NA16OAR4320199 to the Northern Gulf Institute from NOAA's Office of Oceanic and Atmospheric Research, U.S. Department of Commerce.
For work supported by funding awarded for the period 1 Oct 2021 through 30 Sept 2026: This work was supported by award NA21OAR4320190 to the Northern Gulf Institute from NOAA's Office of Oceanic and Atmospheric Research, U.S. Department of Commerce.